mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
67 lines
1.7 KiB
YAML
67 lines
1.7 KiB
YAML
name: pbccs
|
|
description: Pacbio ccs - Generate Higly Accurate Single-Molecule Consensus Reads
|
|
keywords:
|
|
- ccs
|
|
tools:
|
|
- pbccs:
|
|
description: pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
|
|
homepage: https://github.com/PacificBiosciences/pbbioconda
|
|
documentation: https://ccs.how/
|
|
tool_dev_url: https://github.com/PacificBiosciences/ccs
|
|
doi: ""
|
|
licence: ["BSD-3-Clause-Clear"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
id: id of the split file
|
|
- bam:
|
|
type: file
|
|
description: Raw subreads bam
|
|
pattern: "*.subreads.bam"
|
|
- pbi:
|
|
type: file
|
|
description: Pacbio BAM Index
|
|
pattern: "*.pbi"
|
|
- chunk_num:
|
|
-type: integer
|
|
-description: BAM part to process
|
|
- chunk_on:
|
|
-type: integer
|
|
-description: Total number of bam parts to process
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bam:
|
|
type: file
|
|
description: CCS sequences in bam format
|
|
pattern: "*.bam"
|
|
- pbi:
|
|
type: file
|
|
description: PacBio Index of CCS sequences
|
|
pattern: "*.pbi"
|
|
- report_txt:
|
|
type: file
|
|
description: Summary of CCS in txt format
|
|
pattern: ".txt"
|
|
- report_json:
|
|
type: file
|
|
description: Summary of CCS in txt json
|
|
pattern: ".json"
|
|
- metrics:
|
|
type: file
|
|
description: Metrics about zmws
|
|
pattern: "*.json.gz"
|
|
|
|
authors:
|
|
- "@sguizard"
|