mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
56 lines
1.5 KiB
YAML
56 lines
1.5 KiB
YAML
name: gatk4_estimatelibrarycomplexity
|
|
description: Estimates the numbers of unique molecules in a sequencing library.
|
|
keywords:
|
|
- gatk4
|
|
- gatk4_estimatelibrarycomplexity
|
|
- duplication_metrics
|
|
- reporting
|
|
tools:
|
|
- gatk4:
|
|
description: Genome Analysis Toolkit (GATK4)
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
|
doi: "10.1158/1538-7445.AM2017-3590"
|
|
licence: ['Apache-2.0']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- cram:
|
|
type: file
|
|
description: BAM/CRAM/SAM file
|
|
pattern: "*.{bam,cram,sam}"
|
|
- fasta:
|
|
type: file
|
|
description: The reference fasta file
|
|
pattern: "*.fasta"
|
|
- fai:
|
|
type: file
|
|
description: Index of reference fasta file
|
|
pattern: "fasta.fai"
|
|
- dict:
|
|
type: file
|
|
description: GATK sequence dictionary
|
|
pattern: "*.dict"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- metrics:
|
|
type: file
|
|
description: File containing metrics on the input files
|
|
pattern: "*.{metrics}"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|