nf-core_modules/software/SOFTWARE/TOOL/test/main.nf
2020-08-07 11:31:07 +01:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { FASTQC } from '../main.nf'
/*
* Test with single-end data
*/
workflow test_single_end {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_single_end' ] )
}
/*
* Test with paired-end data
*/
workflow test_paired_end {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true),
file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_paired_end' ] )
}
workflow {
test_single_end()
test_paired_end()
}