nf-core_modules/tests/modules/expansionhunter/test.yml at 6bf0a407f6427c017921e7d6f30c58b80c6e4445 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-11 04:33:10 +00:00

Ramprasad Neethiraj 49b18b1639

add stub to modules used in raredisease pipeline (#1206 )

* add stub section

* add stub for bcftools norm

* add stub to more modules

* fix expansionhunter tests

* revert changes -picard

* Update stub to write version no.s to a file

* add picard

* revert picard again

* add stubs to more modules

* fix bwamem2

* add bcftools view

* add stubs

* fix svdb query

* review suggestions

2022-03-28 17:48:39 +02:00

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 - name: expansionhunter test_expansionhunter
   command: nextflow run ./tests/modules/expansionhunter -entry test_expansionhunter -c ./tests/config/nextflow.config -c ./tests/modules/expansionhunter/nextflow.config
   tags:
     - expansionhunter
   files:
     - path: output/expansionhunter/test.vcf
       md5sum: cfd4a1d35c0e469b99eb6aaa6d22de76