nf-core_modules/tests/software/picard/mergesamfiles/test.yml at 6c70d65ae6c59a78fdc13072a114bfa530325b0a - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 13:23:09 +00:00

Gregor Sturm 2dba72dd14

Fix a bunch of failing tests after switching to test config (#378 )

* Update test for trimgalore

* Fix picard markduplicate test

* Fix tests for picard mergesamfiles

* Fix checksum for markduplicates

* Fix multiplemetrics and wgsmetrics

* Fix checksum for mergesamfiles

2021-03-24 18:28:54 +00:00

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YAML

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 - name: picard mergesamfiles
   command: nextflow run ./tests/software/picard/mergesamfiles -entry test_picard_mergesamfiles -c tests/config/nextflow.config
   tags:
     - picard
     - picard_mergesamfiles
   files:
     - path: ./output/picard/test.bam
       md5sum: b8bd6c22f36c6ebc91bca98bd637a2eb