mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 08:12:03 +00:00
a552d97849
* added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
15 lines
625 B
Text
15 lines
625 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BCFTOOLS_CONSENSUS } from '../../../../software/bcftools/consensus/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_bcftools_consensus {
|
|
def input = []
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test.vcf.gz", checkIfExists: true) ],
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/vcf/test.vcf.gz.tbi", checkIfExists: true) ],
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/fasta/test_genome.fasta", checkIfExists: true) ] ]
|
|
|
|
BCFTOOLS_CONSENSUS ( input )
|
|
}
|