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134c8ef6ce
* add samtools merge * Update pytest_software.yml * get it back to 20.11.0-edge * Update test.yml * Update test.yml * Update test.yml * Update test.yml
16 lines
653 B
Text
16 lines
653 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_MERGE } from '../../../../software/samtools/merge/main.nf' addParams( options: [:] )
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workflow test_samtools_merge {
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def input = []
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input = [ [ id: 'test' ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/bam/test_methylated_paired_end.sorted.bam", checkIfExists: true ),
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_single_end.sorted.bam", checkIfExists: true) ] ]
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SAMTOOLS_MERGE ( input )
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}
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