SusiJo 98ffb09002 Added output files to ASCAT (#1820) ... * add unzip alleles + loci * fix the partial absolute prefix path * exchanged deprecated function + added metrics * updated meta * tested logRCorrection + cram input * added BED for WES * added outputs + alleleCounter version * test samtools chr operations, fixed cancerit conda * ch formatting, fasta, bed input * comment out local tests * added metrics, bed, ref_fasta * rm print statement * added stub outputs * rm versions.yml * fix linting * rm fictitious md5sums for stub-run * try fixing top-level of stub versions.yml * ordered inputs alphabetically, ref_fasta -> fasta * rm R system command, adjust meta.yml * prettier yml * added outputs + prefix to outputs * added test-yml outputs * change underscores to dots		2022-06-28 14:45:57 +02:00
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main.nf	Update ASCAT module (#1805)	2022-06-23 17:06:00 +02:00
nextflow.config	Update ASCAT module (#1805)	2022-06-23 17:06:00 +02:00
test.yml	Added output files to ASCAT (#1820)	2022-06-28 14:45:57 +02:00