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https://github.com/MillironX/nf-core_modules.git
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9d5ad1894b
* updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
44 lines
952 B
Text
44 lines
952 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GOAT_TAXONSEARCH } from '../../../../modules/goat/taxonsearch/main.nf'
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//
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// Test with genus name (Canis)
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//
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workflow test_goat_taxonsearch_single_species {
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input = [
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[ id:'test_single_species' ], // meta map
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taxon = 'Meles meles',
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[]
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]
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GOAT_TAXONSEARCH ( input )
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}
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//
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// Test with genus (Drosophila, fruit flies) using NCBI taxonomy ID
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//
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workflow test_goat_taxonsearch_genus_id {
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input = [
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[ id:'test_genus_id' ], // meta map
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taxon = '7215',
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[]
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]
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GOAT_TAXONSEARCH ( input )
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}
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//
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// Test with multiple species from a taxa file
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//
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workflow test_goat_taxonsearch_species {
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input = [
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[ id:'test_species' ], // meta map
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taxon = '',
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/goat_taxonsearch/taxonomy_ids.txt', checkIfExists: true)
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]
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GOAT_TAXONSEARCH ( input )
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}
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