mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.2 KiB
YAML
39 lines
1.2 KiB
YAML
name: khmer_normalizebymedian
|
|
description: Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible.
|
|
keywords:
|
|
- digital normalization
|
|
- khmer
|
|
tools:
|
|
- khmer:
|
|
description: khmer k-mer counting library
|
|
homepage: https://github.com/dib-lab/khmer
|
|
documentation: https://khmer.readthedocs.io/en/latest/
|
|
tool_dev_url: https://github.com/dib-lab/khmer
|
|
doi: "https://doi.org/10.12688/f1000research.6924.1"
|
|
licence: ["BSD License"]
|
|
|
|
input:
|
|
- pe_reads:
|
|
type: files
|
|
description: Paired-end interleaved fastq files
|
|
pattern: "*.{fq,fastq}.gz"
|
|
- se_reads:
|
|
type: files
|
|
description: Single-end fastq files
|
|
pattern: "*.{fq,fastq}.gz"
|
|
- name:
|
|
type: string
|
|
description: filename for output file(s); ".fastq.gz" will be appended
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- reads:
|
|
type: file
|
|
description: Interleaved fastq files
|
|
pattern: "*.{fq,fastq}.gz"
|
|
|
|
authors:
|
|
- "@erikrikarddaniel"
|