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79a9d5e1ea
NGSCheckMate ncm mode, working on bam files and vcf files to check that (human) samples match as expected Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
29 lines
1.2 KiB
YAML
29 lines
1.2 KiB
YAML
- name: ngscheckmate ncm test_ngscheckmate_ncm_bam
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command: nextflow run tests/modules/ngscheckmate/ncm -entry test_ngscheckmate_ncm_bam -c tests/config/nextflow.config
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tags:
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- ngscheckmate/ncm
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- ngscheckmate
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files:
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- path: output/ngscheckmate/output_all.txt
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md5sum: f71a712c3f6ecf64dd526365212f1b7c
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- path: output/ngscheckmate/output_corr_matrix.txt
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md5sum: 6777377aa9ae3d57f841b12896318db0
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- path: output/ngscheckmate/output_matched.txt
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md5sum: f71a712c3f6ecf64dd526365212f1b7c
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- path: output/ngscheckmate/versions.yml
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md5sum: fbb2bebd65b4f4e1e93c6bf5c08a6829
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- name: ngscheckmate ncm test_ngscheckmate_ncm_vcf
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command: nextflow run tests/modules/ngscheckmate/ncm -entry test_ngscheckmate_ncm_vcf -c tests/config/nextflow.config
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tags:
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- ngscheckmate/ncm
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- ngscheckmate
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files:
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- path: output/ngscheckmate/output_all.txt
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md5sum: fd74956dcac279b6f58e82ea73e344f8
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- path: output/ngscheckmate/output_corr_matrix.txt
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md5sum: 0c86bdad2721c470fe6be119f291c8e5
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- path: output/ngscheckmate/output_matched.txt
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md5sum: fd74956dcac279b6f58e82ea73e344f8
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- path: output/ngscheckmate/versions.yml
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md5sum: f06910b83dde194a47870c553cefe193
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