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60 lines
1.5 KiB
YAML
60 lines
1.5 KiB
YAML
name: vcfanno
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description: quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files
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keywords:
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- vcf
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- bed
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- annotate
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- variant
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- lua
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- toml
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tools:
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- vcfanno:
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description: annotate a VCF with other VCFs/BEDs/tabixed files
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homepage: None
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documentation: https://github.com/brentp/vcfanno#vcfanno
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tool_dev_url: https://github.com/brentp/vcfanno
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doi: "10.1186/s13059-016-0973-5"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: query VCF file
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pattern: "*.{vcf, vcf.gz}"
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- vcf_tabix:
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type: file
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description: tabix index of query VCF - only needed if vcf is compressed
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pattern: "*.vcf.gz.tbi"
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- toml:
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type: file
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description: configuration file
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pattern: "*.toml"
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- resource_dir:
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type: file
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description: |
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This directory contains referenced files in the TOML config,
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and the corresponding indicies e.g. exac.vcf.gz + exac.vcf.gz.tbi,
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with exception to the lua file.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Annotated VCF file
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pattern: "*.vcf"
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authors:
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- "@projectoriented"
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