mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
83 lines
3.5 KiB
YAML
83 lines
3.5 KiB
YAML
- name: seqkit split2 single-end length
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: 6f7d58ba35c254c0817fe9a7c69862e4
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: cf38c51506e45380fe25abdd1bd5ccc6
|
|
|
|
- name: seqkit split2 single-end size
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: bf835e685d597fc1ab5e5ac7dd689619
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: 703d95ff4fbb5b7fb4da8a164ba9aa54
|
|
|
|
- name: seqkit split2 single-end part
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: fa25951435471238d5567fd2cae31f55
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: 1dcf631aaaa5e7e0bd6c9668fbc6e04a
|
|
- path: output/seqkit/test.split/test_1.part_003.fastq.gz
|
|
md5sum: 8bc86ba83a611c54f592f4eae19b680f
|
|
|
|
- name: seqkit split2 paired-end length
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: 6f7d58ba35c254c0817fe9a7c69862e4
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: cf38c51506e45380fe25abdd1bd5ccc6
|
|
- path: output/seqkit/test.split/test_2.part_001.fastq.gz
|
|
md5sum: 6b094b1ba7c439fe44c1bb5e99a02ba4
|
|
- path: output/seqkit/test.split/test_2.part_002.fastq.gz
|
|
md5sum: 927097c6ac7522199a9e016333181a8e
|
|
|
|
- name: seqkit split2 paired-end size
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: bf835e685d597fc1ab5e5ac7dd689619
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: 703d95ff4fbb5b7fb4da8a164ba9aa54
|
|
- path: output/seqkit/test.split/test_2.part_001.fastq.gz
|
|
md5sum: 09d0dd83b5b1b9b95d316eeed79ea5ba
|
|
- path: output/seqkit/test.split/test_2.part_002.fastq.gz
|
|
md5sum: 8796c3f327b1094244bfcdb36d536526
|
|
|
|
- name: seqkit split2 paired-end part
|
|
command: nextflow run ./tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config
|
|
tags:
|
|
- seqkit
|
|
- seqkit/split2
|
|
files:
|
|
- path: output/seqkit/test.split/test_1.part_001.fastq.gz
|
|
md5sum: fa25951435471238d5567fd2cae31f55
|
|
- path: output/seqkit/test.split/test_1.part_002.fastq.gz
|
|
md5sum: 1dcf631aaaa5e7e0bd6c9668fbc6e04a
|
|
- path: output/seqkit/test.split/test_1.part_003.fastq.gz
|
|
md5sum: 8bc86ba83a611c54f592f4eae19b680f
|
|
- path: output/seqkit/test.split/test_2.part_001.fastq.gz
|
|
md5sum: f0055c99cd193fd97466b3cde9dd1b8f
|
|
- path: output/seqkit/test.split/test_2.part_002.fastq.gz
|
|
md5sum: 8a90df768201785f7a7cd5dbb41e846a
|
|
- path: output/seqkit/test.split/test_2.part_003.fastq.gz
|
|
md5sum: 890b90083e8e1606bd13ba34149cedd7
|