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33 lines
891 B
Text
33 lines
891 B
Text
process BLAST_MAKEBLASTDB {
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tag "$fasta"
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label 'process_medium'
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conda (params.enable_conda ? 'bioconda::blast=2.12.0' : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/blast:2.12.0--pl5262h3289130_0' :
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'quay.io/biocontainers/blast:2.12.0--pl5262h3289130_0' }"
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input:
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path fasta
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output:
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path 'blast_db' , emit: db
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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"""
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makeblastdb \\
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-in $fasta \\
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$args
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mkdir blast_db
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mv ${fasta}* blast_db
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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blast: \$(blastn -version 2>&1 | sed 's/^.*blastn: //; s/ .*\$//')
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END_VERSIONS
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"""
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}
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