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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1,008 B
YAML
39 lines
1,008 B
YAML
name: seqkit_split2
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description: Split single or paired-end fastq.gz files
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keywords:
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- split
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- fastq
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tools:
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- seqkit:
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description: |
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Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
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homepage: https://github.com/shenwei356/seqkit
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documentation: https://bioinf.shenwei.me/seqkit/
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doi: 10.1371/journal.pone.0163962
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: FastQ files
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pattern: "*.{fq.gz/fastq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Split fastq files
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pattern: "*.{fq.gz/fastq.gz}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@FriederikeHanssen"
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