nf-core_modules/modules/vcfanno/meta.yml
Mei Wu 2597c31d6b
refactored vcfanno (#1266)
* final refactor: using tarball instead
2022-02-21 11:49:21 +01:00

60 lines
1.5 KiB
YAML

name: vcfanno
description: quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files
keywords:
- vcf
- bed
- annotate
- variant
- lua
- toml
tools:
- vcfanno:
description: annotate a VCF with other VCFs/BEDs/tabixed files
homepage: None
documentation: https://github.com/brentp/vcfanno#vcfanno
tool_dev_url: https://github.com/brentp/vcfanno
doi: "10.1186/s13059-016-0973-5"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: query VCF file
pattern: "*.{vcf, vcf.gz}"
- vcf_tabix:
type: file
description: tabix index of query VCF - only needed if vcf is compressed
pattern: "*.vcf.gz.tbi"
- toml:
type: file
description: configuration file
pattern: "*.toml"
- resource_dir:
type: file
description: |
This directory contains referenced files in the TOML config,
and the corresponding indicies e.g. exac.vcf.gz + exac.vcf.gz.tbi,
with exception to the lua file.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- vcf:
type: file
description: Annotated VCF file
pattern: "*.vcf"
authors:
- "@projectoriented"