| .. |
|
abacas
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
adapterremoval
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
allelecounter
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
arriba
|
Added module arriba (#611)
|
2021-07-22 15:19:42 +01:00 |
|
artic
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
bandage/image
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
bbmap
|
Bbmap index (#683)
|
2021-09-03 09:28:28 +02:00 |
|
bcftools
|
Add bcftools/query module (#670)
|
2021-09-14 09:19:01 +02:00 |
|
bedtools
|
Add bedtools/makewindows module (#658)
|
2021-09-07 14:36:06 -04:00 |
|
bismark
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
blast
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
bowtie
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
bowtie2
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
bwa
|
update: BWA/ALN (#653)
|
2021-08-17 15:55:54 +02:00 |
|
bwamem2
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
bwameth
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
cat/fastq
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
cnvkit
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
cooler
|
update typos. change quote from ' to ". (#652)
|
2021-08-16 11:57:22 +02:00 |
|
cutadapt
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
damageprofiler
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
deeptools
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
delly/call
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
dragonflye
|
add module for dragonflye (#633)
|
2021-08-16 11:51:30 +02:00 |
|
dshbio
|
Add dsh-bio export-segments module (#631)
|
2021-08-17 15:53:41 +02:00 |
|
ensemblvep
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
expansionhunter
|
Expansionhunter (#666)
|
2021-08-16 17:47:42 +02:00 |
|
fastp
|
enhance module fastp: add save_merged (#598) (#614)
|
2021-07-23 10:44:00 +01:00 |
|
fastqc
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
fasttree
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
fgbio
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
flash
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
gatk4
|
Mutect2 (#682)
|
2021-09-13 16:16:23 +01:00 |
|
genmap
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
gffread
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
graphmap2
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
gubbins
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
gunzip
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
hifiasm
|
Add hifiasm module (#596)
|
2021-07-20 21:50:22 +01:00 |
|
hisat2
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
hmmer/hmmalign
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
homer
|
Homer Modules (#75)
|
2021-09-08 15:40:34 +00:00 |
|
iqtree
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
ivar
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
kallisto/index
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
kallistobustools
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
kraken2/kraken2
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
last
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
lib
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
lofreq
|
fix: lofreq/callparallel missing arg (#562) (#586)
|
2021-07-19 09:19:27 +01:00 |
|
macs2/callpeak
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
malt
|
module: MALT/RUN (#646)
|
2021-08-04 11:06:08 +02:00 |
|
mash/sketch
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
metaphlan3
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
methyldackel
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
minia
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
minimap2
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
mosdepth
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
msisensor
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
multiqc
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
muscle
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
nanolyse
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
nanoplot
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
nextclade
|
Update Nextclade to output all files by default (#638)
|
2021-07-28 19:49:50 +01:00 |
|
optitype
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
pairix
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
pairtools
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
pangolin
|
Bump Pangolin to 3.1.7 (#593)
|
2021-07-20 12:25:36 +01:00 |
|
phantompeakqualtools
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
picard
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
plasmidid
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
plink/vcf
|
Adding plink/vcf module (#656)
|
2021-09-14 08:51:40 +02:00 |
|
preseq/lcextrap
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
prodigal
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
prokka
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
pycoqc
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
qcat
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
qualimap
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
quast
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
rapidnj
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
rasusa
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
raxmlng
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
rsem
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
rseqc
|
Require r-base>=3.5 for RSeqC Conda envs (#654)
|
2021-08-05 18:59:56 +01:00 |
|
salmon
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
samtools
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
seacr/callpeak
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
seqkit/split2
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
seqtk
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
sequenzautils
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
seqwish/induce
|
Update seqwish reported version to match bioconda version. (#678)
|
2021-08-26 15:33:38 -05:00 |
|
shovill
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
snpeff
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
snpsites
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
sortmerna
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
spades
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
star
|
Added PL tag in read group information for downstream analysis (#649)
|
2021-08-04 11:16:51 +02:00 |
|
strelka/germline
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
stringtie
|
Add option -p to set the # of cpus on stringtie (#601)
|
2021-07-21 15:38:40 +02:00 |
|
subread/featurecounts
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
tabix
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
tiddit/sv
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
trimgalore
|
nf-core modules bump-versions for all modules (#630)
|
2021-07-28 09:10:44 +01:00 |
|
ucsc
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
umitools
|
Add --paired flag to umitools dedup and bump to 1.1.2 (#583)
|
2021-07-16 14:21:08 +01:00 |
|
unicycler
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
untar
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
unzip
|
module: unzip (#642)
|
2021-08-02 09:40:57 +02:00 |
|
variantbam
|
Add variantbam (#618)
|
2021-07-26 19:07:29 +01:00 |
|
vcftools
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
|
yara
|
Rename software/ directory to modules/ to re-organise module structure (#567)
|
2021-07-07 10:10:18 +01:00 |
6ff995e93d