nf-core_modules/modules/krona/kronadb/main.nf
Simone Carpanzano a5e7943f2b
update krona module
add "$args" to the module
2022-04-27 22:43:31 +02:00

30 lines
818 B
Text

def VERSION='2.7.1' // Version information not provided by tool on CLI
process KRONA_KRONADB {
label 'process_low'
conda (params.enable_conda ? "bioconda::krona=2.7.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/krona:2.7.1--pl526_5' :
'quay.io/biocontainers/krona:2.7.1--pl526_5' }"
output:
path 'taxonomy/taxonomy.tab', emit: db
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
script:
def args = task.ext.args ?: ''
"""
ktUpdateTaxonomy.sh \\
$args \\
taxonomy
cat <<-END_VERSIONS > versions.yml
"${task.process}":
krona: $VERSION
END_VERSIONS
"""
}