mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
name: bcftools_isec
|
|
description: Apply set operations to VCF files
|
|
keywords:
|
|
- variant calling
|
|
- intersect
|
|
- union
|
|
- complement
|
|
- VCF
|
|
tools:
|
|
- isec:
|
|
description: |
|
|
Computes intersections, unions and complements of VCF files.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcfs:
|
|
type: files
|
|
description: |
|
|
List containing 2 or more vcf files
|
|
e.g. [ 'file1.vcf', 'file2.vcf' ]
|
|
- tbis:
|
|
type: files
|
|
description: |
|
|
List containing the tbi index files corresponding to the vcfs input files
|
|
e.g. [ 'file1.vcf.tbi', 'file2.vcf.tbi' ]
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- results:
|
|
type: directory
|
|
description: Folder containing the set operations results perform on the vcf files
|
|
pattern: "${prefix}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|