mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 15:38:17 -05:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
15 lines
487 B
Text
15 lines
487 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BEDTOOLS_SLOP } from '../../../../modules/bedtools/slop/main.nf' addParams( options: [args: '-l 15 -r 30', suffix: '_out'] )
|
|
|
|
workflow test_bedtools_slop {
|
|
input = [ [ id:'test'],
|
|
file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
|
|
]
|
|
sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
|
|
|
|
BEDTOOLS_SLOP ( input, sizes )
|
|
}
|
|
|