mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 12:28:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
15 lines
539 B
Text
15 lines
539 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MUSCLE } from '../../../modules/muscle/main.nf' addParams( options: ['args': '-fasta -verbose -phys -phyi -maxiters 2'])
|
|
include { MUSCLE as MUSCLE_TREE } from '../../../modules/muscle/main.nf' addParams( options: ['args': '-maketree'])
|
|
|
|
workflow test_muscle {
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
|
|
|
|
MUSCLE ( input )
|
|
MUSCLE_TREE ( MUSCLE.out.aligned_fasta )
|
|
}
|