mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 12:28:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
26 lines
777 B
Text
26 lines
777 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--model GTR+G'] )
|
|
include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../modules/raxmlng/main.nf' addParams( options: [args:'--all --model GTR+G --bs-trees 1000'] )
|
|
|
|
//
|
|
// Test without bootstrapping
|
|
//
|
|
workflow test_raxmlng_no_bootstrap {
|
|
|
|
input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
|
|
|
|
RAXMLNG_NO_BOOTSTRAP ( input )
|
|
}
|
|
|
|
//
|
|
// Test with bootstrapping
|
|
//
|
|
workflow test_raxmlng_bootstrap {
|
|
|
|
input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
|
|
|
|
RAXMLNG_BOOTSTRAP ( input )
|
|
}
|