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https://github.com/MillironX/nf-core_modules.git
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70daf8be30
This commit provides a minor refactoring with som
Nextflow code style improvments:
- Replaces `.toGiga()` with `.giga`
- Replaces `tag { foo }` with `tag "$foo"`
- Move publishDir before input declarations. Directives should be
before the first input. Tho this is not enforced, it may be in
future versions.
- Replaces input `file` with `path`
- Remove unnecessary parentheses
31 lines
627 B
Text
31 lines
627 B
Text
nextflow.preview.dsl=2
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process MULTIQC {
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// tag "FastQC - $sample_id"
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publishDir "${outdir}/multiqc",
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mode: "copy", overwrite: true
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input:
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path file
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val outdir
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val multiqc_args
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// multiqc_args are best passed into the workflow in the following manner:
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// --multiqc_args="--exlude STAR --title custom_report_title"
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val verbose
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output:
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path "*html", emit: html
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script:
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if (verbose){
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println ("[MODULE] MULTIQC ARGS: " + multiqc_args)
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}
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"""
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multiqc $multiqc_args -x work .
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"""
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}
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