mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
2dba72dd14
* Update test for trimgalore * Fix picard markduplicate test * Fix tests for picard mergesamfiles * Fix checksum for markduplicates * Fix multiplemetrics and wgsmetrics * Fix checksum for mergesamfiles
17 lines
657 B
YAML
17 lines
657 B
YAML
- name: picard markduplicates on sorted bam
|
|
command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
|
|
tags:
|
|
- picard
|
|
- picard_markduplicates
|
|
files:
|
|
- path: ./output/picard/test.MarkDuplicates.metrics.txt
|
|
- path: ./output/picard/test.bam
|
|
md5sum: fe8ed25b4bd25be0cc7a8730fc3b2f30
|
|
|
|
- name: picard markduplicates on unsorted bam
|
|
command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
|
|
tags:
|
|
- picard
|
|
- picard_markduplicates
|
|
- should fail
|
|
exit_code: 1
|