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3f14b1fabe
* add shovill module * removed deprecated shovill module * fix line ending in functions.nf * fix yaml indentation * reduce spades memory usage * update md5sums * remove non reproducible md5sum * Update test.yml Remove last non-reproducible md5sum. * purely cosmetic order change * proper process label, improve output readability Co-authored-by: Florian Wuennemann <flowuenne@gmail.com>
55 lines
1.9 KiB
YAML
55 lines
1.9 KiB
YAML
- name: shovill with spades
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command: nextflow run ./tests/software/shovill -entry test_shovill -c tests/config/nextflow.config
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tags:
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- shovill
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- shovill_spades
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files:
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- path: output/shovill/contigs.gfa
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md5sum: 277af5d8ae8a0d2432db59a316226828
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- path: output/shovill/spades.fasta
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md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- name: shovill with megahit
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command: nextflow run ./tests/software/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
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tags:
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- shovill
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- shovill_megahit
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.fastg
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- path: output/shovill/megahit.fasta
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- path: output/shovill/shovill.log
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- name: shovill with skesa
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command: nextflow run ./tests/software/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
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tags:
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- shovill
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- shovill_skesa
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/shovill/skesa.fasta
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md5sum: c0c2d11b633310eb1437345cb599c33c
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.log
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- name: shovill with velvet
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command: nextflow run ./tests/software/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
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tags:
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- shovill
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- shovill_velvet
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files:
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.LastGraph
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- path: output/shovill/velvet.fasta
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