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1f8f86b793
* takes gunzip out of fargene main.nf * update definition of input * options.args -> args Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
16 lines
471 B
Text
16 lines
471 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GUNZIP } from '../../../modules/gunzip/main.nf'
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include { FARGENE } from '../../../modules/fargene/main.nf'
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workflow test_fargene {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['illumina']['test1_contigs_fa_gz'], checkIfExists: true) ]
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hmm_model = 'class_a'
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GUNZIP ( input )
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FARGENE ( GUNZIP.out.gunzip, hmm_model )
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}
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