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nf-core_modules/modules/gatk4
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GCJMackenzie 71945a5b5f
Mutect2 add mitochondria mode and update tests (#967) 
* new mitochondria mode added, tests updated to allow for temp fix for test data

* add cram test

* bam/bam_idx renamed to input and input_index

Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org>
2021-10-29 11:27:56 +01:00
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applybqsr Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
baserecalibrator Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
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createsomaticpanelofnormals Createsomaticpanelofnormals (#859) 2021-10-23 19:30:14 +01:00
estimatelibrarycomplexity Add gatk4/estimatelibrarycomplexity (#965) 2021-10-28 17:49:27 +02:00
fastqtosam Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
filtermutectcalls Filtermutectcalls (#796) 2021-10-23 18:45:19 +01:00
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mutect2 Mutect2 add mitochondria mode and update tests (#967) 2021-10-29 11:27:56 +01:00
revertsam Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
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