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https://github.com/MillironX/nf-core_modules.git
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4b8c7ac7bd
* added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print
24 lines
737 B
Text
24 lines
737 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_BAM2FQ } from '../../../../modules/samtools/bam2fq/main.nf' addParams( options: [args: "-T RX"] )
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workflow test_samtools_bam2fq_nosplit {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_umi_converted_bam'], checkIfExists: true) ]
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split = false
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SAMTOOLS_BAM2FQ ( input, split )
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}
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workflow test_samtools_bam2fq_withsplit {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_umi_converted_bam'], checkIfExists: true) ]
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split = true
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SAMTOOLS_BAM2FQ ( input, split )
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}
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