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e3a5795652
* fix(homer): Update expected file path to improve caching * docs(homer): Update findpeaks * test(homer): Add maketagdirectory dependency Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
40 lines
1.1 KiB
YAML
40 lines
1.1 KiB
YAML
name: homer_findpeaks
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description: Find peaks with HOMER suite
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keywords:
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- annotations
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- peaks
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tools:
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- homer:
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description: |
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HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
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homepage: "http://homer.ucsd.edu/homer/index.html"
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documentation: "http://homer.ucsd.edu/homer/"
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tool_dev_url: "http://homer.ucsd.edu/homer/ngs/peaks.html"
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doi: 10.1016/j.molcel.2010.05.004.
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tagDir:
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type: directory
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description: "The 'Tag Directory'"
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pattern: "tagDir"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- peaks:
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type: file
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description: The found peaks
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pattern: "*.peaks.txt"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@EMiller88"
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