mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
34 lines
948 B
Text
34 lines
948 B
Text
process MERYL_HISTOGRAM {
|
|
tag "$meta.id"
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? "bioconda::meryl=1.3" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/meryl:1.3--h87f3376_1':
|
|
'quay.io/biocontainers/meryl:1.3--h87f3376_1' }"
|
|
|
|
input:
|
|
tuple val(meta), path(meryl_db)
|
|
|
|
output:
|
|
tuple val(meta), path("*.hist"), emit: hist
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
def prefix = task.ext.prefix ?: "${meta.id}"
|
|
"""
|
|
meryl histogram \\
|
|
threads=$task.cpus \\
|
|
$args \\
|
|
$meryl_db > ${prefix}.hist
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
meryl: \$( meryl --version |& sed 's/meryl //' )
|
|
END_VERSIONS
|
|
"""
|
|
}
|