nf-core_modules/software/bedtools/genomecov/test/main.nf
2020-07-14 16:47:26 +02:00

18 lines
513 B
Text

#!/usr/bin/env nextflow
nextflow.preview.dsl = 2
params.genomecov_args = '' //'-bg'
include check_output from '../../../../tests/functions/check_process_outputs.nf' // params(params)
include GENOMECOV from '../main.nf' params(params)
// Define input channels
ch_input = Channel.fromPath('./input_data/JK2067_downsampled_s0.1.bam')
chrom_sizes = Channel.fromPath('./input_data/genome.sizes')
// Run the workflow
workflow {
GENOMECOV(ch_input, chrom_sizes, params.genomecov_args)
// .check_output()
}