Francesco L abe025677c update to kraken2: breaking change - output channels renamed (#1525) ... * updated kraken2 module to include optional classification of each input reads, and make fastq outputs optional NB: this is a breaking change, because the output channels have been renamed as a consequence of changes * updated yml * pigz command made optional, in order to be executed only if fastq of classified/unclassified reads are saved * updated test yaml file for kraken2 * fixed TODOs and renamed variables and outputs * untar in conda cannot keep same md5sum of version, and therefore md5sum check removed * improved description of the options Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>		2022-04-21 14:33:59 +02:00
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kraken2	update to kraken2: breaking change - output channels renamed (#1525)	2022-04-21 14:33:59 +02:00