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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: fgbio_callmolecularconsensusreads
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description: Calls consensus sequences from reads with the same unique molecular tag.
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keywords:
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- UMIs
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- consensus sequence
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- bam
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- sam
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tools:
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- fgbio:
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description: Tools for working with genomic and high throughput sequencing data.
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homepage: https://github.com/fulcrumgenomics/fgbio
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documentation: http://fulcrumgenomics.github.io/fgbio/
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false, collapse:false ]
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- bam:
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type: file
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description: |
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The input SAM or BAM file.
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pattern: "*.{bam,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: |
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Output SAM or BAM file to write consensus reads.
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pattern: "*.{bam,sam}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@sruthipsuresh"
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