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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: pycoqc
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description: write your description here
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keywords:
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- qc
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- quality control
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- sequencing
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- nanopore
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tools:
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- pycoqc:
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description: PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
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homepage: https://github.com/tleonardi/pycoQC
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documentation: https://tleonardi.github.io/pycoQC/
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tool_dev_url: https://github.com/tleonardi/pycoQC
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doi: "10.21105/joss.01236"
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licence: ["GNU General Public v3 (GPL v3)"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- summary:
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type: file
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description: sequencing summary file
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pattern: "*.{txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- html:
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type: file
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description: Results in HTML format
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- json:
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type: file
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description: Results in JSON format
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pattern: "*.{json}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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