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42 lines
1.3 KiB
Text
42 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTK_FASTK } from '../../../../modules/fastk/fastk/main.nf'
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include { MERQURYFK_MERQURYFK } from '../../../../modules/merquryfk/merquryfk/main.nf'
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workflow test_merquryfk_merquryfk_png {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
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]
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assembly = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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]
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FASTK_FASTK ( input )
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MERQURYFK_MERQURYFK ( FASTK_FASTK.out.hist
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.join( FASTK_FASTK.out.ktab )
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.join( Channel.value( assembly ) )
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)
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}
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workflow test_merquryfk_merquryfk_pdf {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
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]
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assembly = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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]
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FASTK_FASTK ( input )
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MERQURYFK_MERQURYFK ( FASTK_FASTK.out.hist
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.join( FASTK_FASTK.out.ktab )
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.join( Channel.value( assembly ) )
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)
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}
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