mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
cac6dc83bb
* hmmcopy gccounter working * Update modules/hmmcopy/gccounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> * Update main.nf Changed version to 0.1.1 as the container says Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
33 lines
938 B
YAML
33 lines
938 B
YAML
name: hmmcopy_gccounter
|
|
description: gcCounter function from HMMcopy utilities, used to generate GC content in non-overlapping windows from a fasta reference
|
|
keywords:
|
|
- hmmcopy
|
|
- gccounter
|
|
- cnv
|
|
tools:
|
|
- hmmcopy:
|
|
description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
|
|
homepage: https://github.com/shahcompbio/hmmcopy_utils
|
|
documentation: https://github.com/shahcompbio/hmmcopy_utils
|
|
tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
|
|
doi: ""
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- wig:
|
|
type: file
|
|
description: wig file containing gc content of each window of the genome
|
|
pattern: "*.{gc.wig}"
|
|
|
|
authors:
|
|
- "@sppearce"
|