mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
754db250a0
* remove params statement * add manta/somatic module * fix strelka target bed thing * removing checksums should make this pass * Update modules/manta/somatic/main.nf Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * fix indentation Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
21 lines
849 B
YAML
21 lines
849 B
YAML
- name: strelka germline test_strelka_germline
|
|
command: nextflow run tests/modules/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/test.genome.vcf.gz
|
|
- path: output/strelka/test.genome.vcf.gz.tbi
|
|
- path: output/strelka/test.variants.vcf.gz
|
|
- path: output/strelka/test.variants.vcf.gz.tbi
|
|
|
|
- name: strelka germline test_strelka_germline_target_bed
|
|
command: nextflow run tests/modules/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/test.genome.vcf.gz
|
|
- path: output/strelka/test.genome.vcf.gz.tbi
|
|
- path: output/strelka/test.variants.vcf.gz
|
|
- path: output/strelka/test.variants.vcf.gz.tbi
|