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7676d9d728
* first commit with files for filtermutectcalls initialised * found missing test file that needs to be resolved * saving config changes * fixing pytest_module conflict * finished module, just needs repository side tests added * test data added, versions file updated * modified to emit correct versions file * Update main.nf * Update test_data.config * updated test script * fixed main.nf * Update main.nf * Update main.nf * removed whitespace from test script * Update test_data.config * Update .gitignore * Update test_data.config * tests changed to new names, main script edited to match comments on learnreads pr * Update meta.yml * Apply suggestions from code review * Update main.nf * Apply suggestions from code review * Apply suggestions from code review * Update main.nf * Update main.nf * Update main.nf * Update main.nf Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> |
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| .. | ||
| applybqsr | ||
| baserecalibrator | ||
| bedtointervallist | ||
| calculatecontamination | ||
| createsequencedictionary | ||
| fastqtosam | ||
| filtermutectcalls | ||
| getpileupsummaries | ||
| haplotypecaller | ||
| intervallisttools | ||
| learnreadorientationmodel | ||
| markduplicates | ||
| mergebamalignment | ||
| mergevcfs | ||
| mutect2 | ||
| revertsam | ||
| samtofastq | ||
| splitncigarreads | ||
| variantfiltration | ||