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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: dragmap_align
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description: Performs fastq alignment to a reference using DRAGMAP
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keywords:
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- alignment
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- map
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- fastq
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- bam
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- sam
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tools:
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- dragmap:
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description: Dragmap is the Dragen mapper/aligner Open Source Software.
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homepage: https://github.com/Illumina/dragmap
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documentation: https://github.com/Illumina/dragmap
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tool_dev_url: https://github.com/Illumina/dragmap#basic-command-line-usage
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doi: ""
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input FastQ files of size 1 and 2 for single-end and paired-end data,
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respectively.
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- hashmap:
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type: file
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description: DRAGMAP hash table
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pattern: "Directory containing DRAGMAP hash table *.{cmp,.bin,.txt}"
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output:
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- bam:
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type: file
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description: Output BAM file containing read alignments
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pattern: "*.{bam}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@Emiller88"
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