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77a2895785
* initial commit [ci skip] * remove todo from the module files [ci skip] * add a sample test case [ci skip] * push the latest work [ci skip] * bump kleborate build * test passing with the new build for kleborate [ci skip] * ready for review * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
18 lines
569 B
Text
18 lines
569 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { KLEBORATE } from '../../../modules/kleborate/main.nf' addParams( options: [:] )
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workflow test_kleborate {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['scaffolds_fasta'], checkIfExists: true)
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]
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]
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KLEBORATE ( input )
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}
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