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77d5dd60eb
* added bamtools stats module and tested * added bamtools stats module and tested * fixing prettier complaints * changed process tag to single
43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
name: "bamtools_stats"
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description: BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
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keywords:
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- bamtools
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- stats
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- bam
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tools:
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- bamtools:
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description: C++ API & command-line toolkit for working with BAM data
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homepage: http://github.com/pezmaster31/bamtools
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documentation: https://github.com/pezmaster31/bamtools/wiki
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tool_dev_url: http://github.com/pezmaster31/bamtools
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doi: ""
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM file
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pattern: "*.bam"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- stats:
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type: file
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description: File containing alignment statistics
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pattern: "*.stats"
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authors:
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- "@lescai"
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