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https://github.com/MillironX/nf-core_modules.git
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35 lines
1.6 KiB
YAML
35 lines
1.6 KiB
YAML
- name: svtk standardize test_svtk_standardize
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command: nextflow run ./tests/modules/svtk/standardize -entry test_svtk_standardize -c ./tests/config/nextflow.config -c ./tests/modules/svtk/standardize/nextflow.config
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tags:
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- svtk
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- svtk/standardize
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files:
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- path: output/manta/test.candidate_small_indels.vcf.gz
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- path: output/manta/test.candidate_small_indels.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.candidate_sv.vcf.gz
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- path: output/manta/test.candidate_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.diploid_sv.vcf.gz
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- path: output/manta/test.diploid_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/svtk/test.std.vcf.gz
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md5sum: f7530f3bc7e6020e758cc996adc8ae35
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- name: svtk standardize test_svtk_standardize_no_contigs
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command: nextflow run ./tests/modules/svtk/standardize -entry test_svtk_standardize_no_contigs -c ./tests/config/nextflow.config -c ./tests/modules/svtk/standardize/nextflow.config
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tags:
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- svtk
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- svtk/standardize
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files:
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- path: output/manta/test.candidate_small_indels.vcf.gz
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- path: output/manta/test.candidate_small_indels.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.candidate_sv.vcf.gz
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- path: output/manta/test.candidate_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/manta/test.diploid_sv.vcf.gz
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- path: output/manta/test.diploid_sv.vcf.gz.tbi
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md5sum: 4cb176febbc8c26d717a6c6e67b9c905
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- path: output/svtk/test.std.vcf.gz
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md5sum: ea67be7438a0fb72db8096e1bc1bb957
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