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07e2868920
* When the `-i` option of bgzip is given, an index is created and needs to be considered an output * It is not necessary to use a subfolder * Updated meta.yml too * Also check that an index name hasn't been requested Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
28 lines
1.1 KiB
YAML
28 lines
1.1 KiB
YAML
- name: tabix bgzip compress
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command: nextflow run ./tests/modules/tabix/bgzip -entry test_tabix_bgzip_compress -c ./tests/config/nextflow.config -c ./tests/modules/tabix/bgzip/nextflow.config
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tags:
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- tabix
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- tabix/bgzip
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files:
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- path: ./output/tabix/test.vcf.gz
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md5sum: fc178eb342a91dc0d1d568601ad8f8e2
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- path: ./output/tabix/test.vcf.gz.gzi
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should_exist: false
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- name: tabix bgzip compress gzi
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command: nextflow run ./tests/modules/tabix/bgzip -entry test_tabix_bgzip_compress_gzi -c ./tests/config/nextflow.config -c ./tests/modules/tabix/bgzip/nextflow.config
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tags:
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- tabix
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- tabix/bgzip
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files:
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- path: ./output/tabix/test.vcf.gz
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md5sum: fc178eb342a91dc0d1d568601ad8f8e2
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- path: ./output/tabix/test.vcf.gz.gzi
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md5sum: 7dea362b3fac8e00956a4952a3d4f474
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- name: tabix bgzip decompress
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command: nextflow run ./tests/modules/tabix/bgzip -entry test_tabix_bgzip_decompress -c ./tests/config/nextflow.config -c ./tests/modules/tabix/bgzip/nextflow.config
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tags:
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- tabix
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- tabix/bgzip
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files:
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- path: ./output/tabix/test.bed
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md5sum: fe4053cf4de3aebbdfc3be2efb125a74
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