mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
33 lines
956 B
YAML
33 lines
956 B
YAML
name: bedtools_getfasta
|
|
description: extract sequences in a FASTA file based on intervals defined in a feature file.
|
|
keywords:
|
|
- bed
|
|
- fasta
|
|
- getfasta
|
|
tools:
|
|
- bedtools:
|
|
description: |
|
|
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html
|
|
input:
|
|
- bed:
|
|
type: file
|
|
description: Bed feature file
|
|
pattern: "*.{bed}"
|
|
- fasta:
|
|
type: file
|
|
description: Input fasta file
|
|
pattern: "*.{fa,fasta}"
|
|
|
|
output:
|
|
- fasta:
|
|
type: file
|
|
description: Output fasta file with extracted sequences
|
|
pattern: "*.{fa}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|