mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-20 23:32:05 +00:00
7830a4a80c
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Start maltextract module * start tests * Get tests working now we have test data * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Changes after review * Update tests/modules/maltextract/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/maltextract/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/maltextract/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: maltextract
|
|
description: Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
|
|
keywords:
|
|
- malt
|
|
- MaltExtract
|
|
- HOPS
|
|
- alignment
|
|
- metagenomics
|
|
- ancient DNA
|
|
- aDNA
|
|
- palaeogenomics
|
|
- archaeogenomics
|
|
- microbiome
|
|
- authentication
|
|
- damage
|
|
- edit distance
|
|
tools:
|
|
- maltextract:
|
|
description: Java tool to work with ancient metagenomics
|
|
homepage: https://github.com/rhuebler/hops
|
|
documentation: https://github.com/rhuebler/hops
|
|
tool_dev_url: https://github.com/rhuebler/hops
|
|
doi: "https://doi.org/10.1186/s13059-019-1903-0"
|
|
licence: ['GPL 3']
|
|
|
|
input:
|
|
- rma6:
|
|
type: file
|
|
description: RMA6 files from MALT
|
|
pattern: "*.rma6"
|
|
- taxon_list:
|
|
type: file
|
|
description: List of target taxa to evaluate
|
|
pattern: "*.txt"
|
|
- ncbi_dir:
|
|
type: directory
|
|
description: Directory containing NCBI taxonomy map and tre files
|
|
pattern: "${ncbi_dir}/"
|
|
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- results:
|
|
type: directory
|
|
description: Directory containing MaltExtract text results files
|
|
pattern: "*.rma6"
|
|
|
|
authors:
|
|
- "@jfy133"
|