mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
58 lines
1.5 KiB
YAML
58 lines
1.5 KiB
YAML
name: methyldackel_mbias
|
|
description: Generates methylation bias plots from alignments
|
|
keywords:
|
|
- methylation
|
|
- 5mC
|
|
- methylseq
|
|
- bisulphite
|
|
- methylation bias
|
|
- mbias
|
|
- qc
|
|
- bam
|
|
- cram
|
|
tools:
|
|
- methyldackel:
|
|
description: |
|
|
A (mostly) universal methylation extractor
|
|
for BS-seq experiments.
|
|
homepage: https://github.com/brentp/bwa-meth
|
|
documentation: https://github.com/brentp/bwa-meth
|
|
arxiv: arXiv:1401.1129
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
pattern: "*.{fasta,fa}"
|
|
- fai:
|
|
type: file
|
|
description: FASTA index file
|
|
pattern: "*.{fai}"
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
- bai:
|
|
type: file
|
|
description: BAM/CRAM index file
|
|
pattern: "*.{bai,crai}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- txt:
|
|
type: file
|
|
description: Text file containing methylation bias
|
|
pattern: "*.{txt}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@phue"
|