mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
36 lines
962 B
YAML
36 lines
962 B
YAML
name: rseqc_bamstat
|
|
description: Generate statistics from a bam file
|
|
keywords:
|
|
- bam
|
|
- qc
|
|
- bamstat
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: the bam file to calculate statistics of
|
|
pattern: "*.{bam}"
|
|
output:
|
|
- txt:
|
|
type: file
|
|
description: bam statistics report
|
|
pattern: "*.bam_stat.txt"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|