mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
889465cb2b
* update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
729 B
Text
16 lines
729 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BCFTOOLS_ISEC } from '../../../../software/bcftools/isec/main.nf' addParams( options: ['args': '--nfiles +2 --output-type z --no-version'] )
|
|
|
|
workflow test_bcftools_isec {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true)],
|
|
[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test2_vcf_gz_tbi'], checkIfExists: true)]
|
|
]
|
|
|
|
BCFTOOLS_ISEC ( input )
|
|
}
|