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https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
42 lines
1.7 KiB
YAML
42 lines
1.7 KiB
YAML
- name: bowtie align single-end
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie/align
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files:
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- path: ./output/bowtie/test.bam
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- path: ./output/bowtie/test.out
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md5sum: 4b9140ceadb8a18ae9330885370f8a0b
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- path: ./output/index/bowtie/genome.3.ebwt
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie/genome.2.ebwt
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md5sum: 02b44af9f94c62ecd3c583048e25d4cf
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- path: ./output/index/bowtie/genome.rev.2.ebwt
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md5sum: 9e6b0c4c1ddb99ae71ff8a4fe5ec6459
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- path: ./output/index/bowtie/genome.4.ebwt
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie/genome.rev.1.ebwt
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md5sum: b37aaf11853e65a3b13561f27a912b06
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- path: ./output/index/bowtie/genome.1.ebwt
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md5sum: d9b76ecf9fd0413240173273b38d8199
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- name: bowtie align paired-end
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie/align
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files:
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- path: ./output/bowtie/test.bam
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- path: ./output/bowtie/test.out
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- path: ./output/index/bowtie/genome.3.ebwt
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie/genome.2.ebwt
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md5sum: 02b44af9f94c62ecd3c583048e25d4cf
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- path: ./output/index/bowtie/genome.rev.2.ebwt
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md5sum: 9e6b0c4c1ddb99ae71ff8a4fe5ec6459
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- path: ./output/index/bowtie/genome.4.ebwt
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie/genome.rev.1.ebwt
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md5sum: b37aaf11853e65a3b13561f27a912b06
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- path: ./output/index/bowtie/genome.1.ebwt
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md5sum: d9b76ecf9fd0413240173273b38d8199
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