mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 08:12:03 +00:00
2dba72dd14
* Update test for trimgalore * Fix picard markduplicate test * Fix tests for picard mergesamfiles * Fix checksum for markduplicates * Fix multiplemetrics and wgsmetrics * Fix checksum for mergesamfiles
21 lines
713 B
Text
21 lines
713 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PICARD_MARKDUPLICATES } from '../../../../software/picard/markduplicates/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_picard_markduplicates_sorted_bam {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
|
|
]
|
|
|
|
PICARD_MARKDUPLICATES ( input )
|
|
}
|
|
|
|
workflow test_picard_markduplicates_unsorted_bam {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
|
|
]
|
|
|
|
PICARD_MARKDUPLICATES ( input )
|
|
}
|